I've grouped all the links in to two main sections, and then sub-grouped by how they make sense in my head! :)

Web, HTTP and REST

Roy T. Fielding Dissertation - Architectural Styles and the Design of Network-based Software Architectures Of particular relevance and note are chapters 4-6 (many only ever read chapter 5 and miss the context + summary *needed* in chapters 4 and 6!)

• Chapter 4 - Designing the Web Architecture: Problems and Insights
• Chapter 5 - Representational State Transfer (REST)
• Chapter 6 - Experience and Evaluation

Roy T. Fielding - REST APIs must be hypertext-driven
Discussion on HTML5 and RESTful HTTP in browsers
Discussion on URIs Resources and Switching content types w/ REST angle (v good)

RFC 2616 HTTP/1.1 and the HTTPbis Working Group HTTP/1.1 update in parts:

1. Messaging
2. Semantics
3. Payload
4. Conditional
5. Range
6. Cache
7. Authentication

Linked Data and the Semantic Web

Linking Open Data Community Project
Linked Data Applications
Equivalence Mining and Matching Frameworks
Linked Data Browsers, Mashups and other Client Applications

Dataset Dynamics - On the Dynamics of Linked Datasets
Realizing a write-enabled Web of Data
Web Access Control (WAC) - a decentralized system for allowing different users and groups various forms of access to resources where users and groups are identified by HTTP URIs.
Discussion of the WAC vocabulary
Socially Aware Cloud Storage Design Note
Distributed Social Networking through Socially Aware Cloud Storage from TimBL
AWWSW - "Architecture of the World Wide Semantic Web" Task Force

SPARQL 1.1 Uniform HTTP Protocol for Managing RDF Graphs
A Linked Data Frontend for SPARQL Endpoints
RAP - RDF API for PHP V0.9.6
Inav the Terrible - An idea for posting RDF through HTTP.

Talis Changesets
Triplify Update Vocabulary

skos as atom

RFC 4287 - The Atom Syndication Format
RFC 5023 - The Atom Publishing Protocol
AtomPub Tombstones - The Atom "deleted-entry" Element
RFC 5005 - Feed Paging and Archiving
Versioning Link Relations - Link Relation Types for Simple Version Navigation between Web Resources

Named Graphs, Provenance and Trust
Accessing Site-Specific APIs Through Write-Wrappers From The Web of Data
Provenance Information in the Web of Data - LDOW 2009 paper
Using Reification To Extend RDF (historical reification approach)
RDF Policy-based URI Access Control for Content Authoring
The Open Provenance Model Core Specification (v1.1)
W3C Provenance Incubator Group

History of the Web 1945, 1980 through 1997 on W3
LEIRI - Legacy extended IRIs for XML resource identification The type of "URI" used in xml:base
CSHALS 2010 W3C Semanic Web Tutorial
Mindswap online RDF Converter
W3 online RDF Validator